STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ47685.1tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like. (223 aa)    
Predicted Functional Partners:
SDH67183.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
  
 0.850
SDJ04475.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
  
 0.850
SDH54483.1
3-ketosteroid 9alpha-monooxygenase subunit B.
  
 0.795
SDH67135.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
  
 0.795
SDH83180.1
Ferredoxin-NADP reductase.
  
 0.795
SDH85020.1
Ferredoxin-NADP reductase.
  
 0.795
SDH92692.1
Ferredoxin-NADP reductase.
  
 0.795
SDJ47660.1
Protein of unknown function.
       0.639
SDJ47749.1
Lysophospholipase, alpha-beta hydrolase superfamily.
 
     0.592
SDJ47725.1
Hypothetical protein.
       0.555
Your Current Organism:
Alloactinosynnema album
NCBI taxonomy Id: 504798
Other names: A. album, Alloactinosynnema album Yuan et al. 2010, Amycolatopsis sp. 03-9939, CCM 7461, DSM 45114, JCM 17965, KCTC 19294, strain 03-9939
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