STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK36891.1Acyl-CoA dehydrogenase. (404 aa)    
Predicted Functional Partners:
SFL08725.1
3-hydroxyacyl-CoA dehydrogenase.
  
 0.869
SFL50614.1
Electron transfer flavoprotein alpha subunit apoprotein.
  
 
 0.742
SFL51514.1
(R)-ethylmalonyl-CoA mutase.
  
 
 0.742
SFL50633.1
Electron transfer flavoprotein beta subunit.
  
 
 0.725
SFL29758.1
3,4-dihydroxy-9,10-secoandrosta-1,3, 5(10)-triene-9,17-dione 4,5-dioxygenase.
  
 
 0.655
SFL54891.1
Acetyl/propionyl-CoA carboxylase, alpha subunit.
  
 0.641
SFK69956.1
Extradiol dioxygenase.
  
 
  0.635
SFK36867.1
2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway).
  
    0.634
SFK36849.1
Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein.
 
 
  0.633
SFK33386.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
  
 
 0.618
Your Current Organism:
Geodermatophilus ruber
NCBI taxonomy Id: 504800
Other names: CCM 7619, DSM 45317, G. ruber, Geodermatophilus ruber Zhang et al. 2011 emend. Montero-Calasanz et al. 2017, Geodermatophilus sp. CPCC 201356, JCM 17967, strain CPCC 201356
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