STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katG-2Catalase-peroxidase; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (739 aa)    
Predicted Functional Partners:
SFL25894.1
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
    
 0.800
SFK76926.1
Fur family transcriptional regulator, ferric uptake regulator; Belongs to the Fur family.
    
 0.796
hisC
Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.722
SFK33094.1
Aspartate/methionine/tyrosine aminotransferase.
     
 0.716
SFL53903.1
L-threonine O-3-phosphate decarboxylase.
     
 0.709
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
     
 0.709
SFL17924.1
aromatic-L-amino-acid decarboxylase.
    
  0.706
SFK38323.1
Valine dehydrogenase (NAD+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
     
 0.610
SFK97111.1
Protein of unknown function.
  
    0.593
SFK76976.1
Hypothetical protein.
       0.529
Your Current Organism:
Geodermatophilus ruber
NCBI taxonomy Id: 504800
Other names: CCM 7619, DSM 45317, G. ruber, Geodermatophilus ruber Zhang et al. 2011 emend. Montero-Calasanz et al. 2017, Geodermatophilus sp. CPCC 201356, JCM 17967, strain CPCC 201356
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