Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFK72711.1 | SFK86419.1 | SAMN04488085_103217 | SAMN04488085_10495 | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | Predicted arabinose efflux permease, MFS family. | 0.443 |
SFK86419.1 | SFK72711.1 | SAMN04488085_10495 | SAMN04488085_103217 | Predicted arabinose efflux permease, MFS family. | Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.443 |
SFK86419.1 | SFK99468.1 | SAMN04488085_10495 | SAMN04488085_105168 | Predicted arabinose efflux permease, MFS family. | Predicted acetyltransferase. | 0.579 |
SFK86419.1 | SFL88779.1 | SAMN04488085_10495 | SAMN04488085_12125 | Predicted arabinose efflux permease, MFS family. | Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.404 |
SFK86419.1 | pdxH | SAMN04488085_10495 | SAMN04488085_10496 | Predicted arabinose efflux permease, MFS family. | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | 0.511 |
SFK99468.1 | SFK86419.1 | SAMN04488085_105168 | SAMN04488085_10495 | Predicted acetyltransferase. | Predicted arabinose efflux permease, MFS family. | 0.579 |
SFL88779.1 | SFK86419.1 | SAMN04488085_12125 | SAMN04488085_10495 | Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Predicted arabinose efflux permease, MFS family. | 0.404 |
pdxH | SFK86419.1 | SAMN04488085_10496 | SAMN04488085_10495 | Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP). | Predicted arabinose efflux permease, MFS family. | 0.511 |