STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK86419.1Predicted arabinose efflux permease, MFS family. (463 aa)    
Predicted Functional Partners:
SFK99468.1
Predicted acetyltransferase.
   
    0.579
pdxH
Pyridoxamine 5'-phosphate oxidase; Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).
       0.511
SFK72711.1
Methionine synthase (B12-dependent); Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
   
 
  0.443
SFL88779.1
Formate dehydrogenase major subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
     
 0.404
Your Current Organism:
Geodermatophilus ruber
NCBI taxonomy Id: 504800
Other names: CCM 7619, DSM 45317, G. ruber, Geodermatophilus ruber Zhang et al. 2011 emend. Montero-Calasanz et al. 2017, Geodermatophilus sp. CPCC 201356, JCM 17967, strain CPCC 201356
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