STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK98619.1Amino acid/polyamine/organocation transporter, APC superfamily. (514 aa)    
Predicted Functional Partners:
SFK98642.1
Primary-amine oxidase.
 
  
  0.820
SFK98591.1
Hypothetical protein.
       0.773
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.669
SFK41144.1
Oligo-1,6-glucosidase.
   
  0.581
SFK49844.1
Alpha-glucosidase.
   
  0.581
SFK99092.1
Alpha-glucosidase.
   
  0.581
SFL33119.1
Amylosucrase.
   
  0.581
SFL45716.1
Trehalose synthase.
   
  0.581
glgE
Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase; Maltosyltransferase that uses maltose 1-phosphate (M1P) as the sugar donor to elongate linear or branched alpha-(1->4)-glucans. Is involved in a branched alpha-glucan biosynthetic pathway from trehalose, together with TreS, Mak and GlgB.
   
  0.581
SFL50881.1
Trehalose synthase.
   
  0.581
Your Current Organism:
Geodermatophilus ruber
NCBI taxonomy Id: 504800
Other names: CCM 7619, DSM 45317, G. ruber, Geodermatophilus ruber Zhang et al. 2011 emend. Montero-Calasanz et al. 2017, Geodermatophilus sp. CPCC 201356, JCM 17967, strain CPCC 201356
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.