STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDG30289.1DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains. (233 aa)    
Predicted Functional Partners:
SDG40408.1
Hypothetical protein.
   
 0.867
SDG43487.1
Signal transduction histidine kinase.
 
  0.786
SDG03672.1
Signal transduction histidine kinase.
  
  0.776
SDI14625.1
Signal transduction histidine kinase.
 
  0.772
SDH63033.1
Signal transduction histidine kinase.
  
  0.744
SDI33106.1
Signal transduction histidine kinase.
  
  0.740
SDH21599.1
Signal transduction histidine kinase.
 
  0.734
SDH55488.1
Signal transduction histidine kinase.
  
  0.725
SDH17274.1
Signal transduction histidine kinase.
 
  0.722
SDG42725.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  0.720
Your Current Organism:
Sinosporangium album
NCBI taxonomy Id: 504805
Other names: DSM 45181, KCTC 19655, S. album, Sinosporangium album Zang et al. 2011, Streptosporangineae bacterium 6014, strain 6014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.