SDH17336.1 protein (Sinosporangium album) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SDH17336.1

NADPH2:quinone reductase. (169 aa)

Predicted Functional Partners:

SDH95965.1

0.863

SDI47357.1

0.847

SDI47343.1

0.838

SDG75685.1

0.799

SDG94971.1

0.799

SDG75593.1

0.782

SDI17712.1

0.782

SDI56604.1

0.782

SDI58526.1

0.782

SDG75628.1

0.781

Your Current Organism:

Sinosporangium album

NCBI taxonomy Id: 504805
Other names: DSM 45181, KCTC 19655, S. album, Sinosporangium album Zang et al. 2011, Streptosporangineae bacterium 6014, strain 6014

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SDG75593.1	SDG75628.1	SAMN05421505_107195	SAMN05421505_107196	Acyl transferase domain-containing protein.	Polyene macrolide polyketide synthase.	0.993
SDG75593.1	SDG75685.1	SAMN05421505_107195	SAMN05421505_107198	Acyl transferase domain-containing protein.	Candicidin polyketide synthase FscB.	0.995
SDG75593.1	SDG94971.1	SAMN05421505_107195	SAMN05421505_109221	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.993
SDG75593.1	SDH17336.1	SAMN05421505_107195	SAMN05421505_11260	Acyl transferase domain-containing protein.	NADPH2:quinone reductase.	0.782
SDG75593.1	SDH95965.1	SAMN05421505_107195	SAMN05421505_12826	Acyl transferase domain-containing protein.	Nonribosomal peptide synthetase DhbF.	0.999
SDG75593.1	SDI17712.1	SAMN05421505_107195	SAMN05421505_1378	Acyl transferase domain-containing protein.	Pimaricinolide synthase, loading module/candicidin polyketide synthase FscA.	0.971
SDG75593.1	SDI47343.1	SAMN05421505_107195	SAMN05421505_1562	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.992
SDG75593.1	SDI47357.1	SAMN05421505_107195	SAMN05421505_1563	Acyl transferase domain-containing protein.	Acyl transferase domain-containing protein.	0.999
SDG75593.1	SDI56604.1	SAMN05421505_107195	SAMN05421505_1711	Acyl transferase domain-containing protein.	Polyene macrolide polyketide synthase/pimaricinolide synthase PimS1.	0.969
SDG75593.1	SDI58526.1	SAMN05421505_107195	SAMN05421505_1771	Acyl transferase domain-containing protein.	Polyene macrolide polyketide synthase.	0.968
SDG75628.1	SDG75593.1	SAMN05421505_107196	SAMN05421505_107195	Polyene macrolide polyketide synthase.	Acyl transferase domain-containing protein.	0.993
SDG75628.1	SDG75685.1	SAMN05421505_107196	SAMN05421505_107198	Polyene macrolide polyketide synthase.	Candicidin polyketide synthase FscB.	0.984
SDG75628.1	SDG94971.1	SAMN05421505_107196	SAMN05421505_109221	Polyene macrolide polyketide synthase.	Acyl transferase domain-containing protein.	0.973
SDG75628.1	SDH17336.1	SAMN05421505_107196	SAMN05421505_11260	Polyene macrolide polyketide synthase.	NADPH2:quinone reductase.	0.781
SDG75628.1	SDH95965.1	SAMN05421505_107196	SAMN05421505_12826	Polyene macrolide polyketide synthase.	Nonribosomal peptide synthetase DhbF.	0.999
SDG75628.1	SDI17712.1	SAMN05421505_107196	SAMN05421505_1378	Polyene macrolide polyketide synthase.	Pimaricinolide synthase, loading module/candicidin polyketide synthase FscA.	0.958
SDG75628.1	SDI47343.1	SAMN05421505_107196	SAMN05421505_1562	Polyene macrolide polyketide synthase.	Acyl transferase domain-containing protein.	0.997
SDG75628.1	SDI47357.1	SAMN05421505_107196	SAMN05421505_1563	Polyene macrolide polyketide synthase.	Acyl transferase domain-containing protein.	0.995
SDG75628.1	SDI56604.1	SAMN05421505_107196	SAMN05421505_1711	Polyene macrolide polyketide synthase.	Polyene macrolide polyketide synthase/pimaricinolide synthase PimS1.	0.955
SDG75628.1	SDI58526.1	SAMN05421505_107196	SAMN05421505_1771	Polyene macrolide polyketide synthase.	Polyene macrolide polyketide synthase.	0.953