STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH27048.1Peptide/nickel transport system permease protein. (318 aa)    
Predicted Functional Partners:
SDH27023.1
Peptide/nickel transport system permease protein.
 
 0.964
SDH27071.1
Peptide/nickel transport system substrate-binding protein.
 0.958
SDG00798.1
Peptide/nickel transport system substrate-binding protein.
  0.901
SDH26991.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
  0.898
SDH44889.1
Oligopeptide transport system permease protein.
 
 0.887
SDH87250.1
Peptide/nickel transport system permease protein.
 
 0.887
SDH00095.1
ABC-type transport system, substrate-binding protein.
  0.850
SDG02884.1
Peptide/nickel transport system permease protein.
 
 0.849
SDH11403.1
Peptide/nickel transport system permease protein.
 
 0.849
SDG00468.1
Peptide/nickel transport system permease protein.
 
 0.848
Your Current Organism:
Sinosporangium album
NCBI taxonomy Id: 504805
Other names: DSM 45181, KCTC 19655, S. album, Sinosporangium album Zang et al. 2011, Streptosporangineae bacterium 6014, strain 6014
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.