STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDH39970.1L-lysine 6-transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (435 aa)    
Predicted Functional Partners:
SDG80200.1
Glutamate synthase (NADPH/NADH) large chain.
     
 0.857
SDG17137.1
Glycine cleavage system T protein (aminomethyltransferase); Belongs to the GcvT family.
 
 
 0.792
SDG05878.1
2-oxoisovalerate dehydrogenase E1 component.
 
  
 0.788
SDG56117.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 0.780
SDI47357.1
Acyl transferase domain-containing protein.
  
 
 0.765
SDG46897.1
Dimethylglycine dehydrogenase/4-methylaminobutanoate oxidase (formaldehyde-forming); Belongs to the GcvT family.
  
 
 0.764
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
  
 
 0.760
SDI26063.1
Acetyltransferase (GNAT) family protein; Belongs to the arginase family.
  
 
 0.750
SDH22018.1
Threonine dehydratase.
   
 
 0.723
SDH27459.1
Phosphate acetyltransferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
    
 0.712
Your Current Organism:
Sinosporangium album
NCBI taxonomy Id: 504805
Other names: DSM 45181, KCTC 19655, S. album, Sinosporangium album Zang et al. 2011, Streptosporangineae bacterium 6014, strain 6014
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