def protein (Oligotropha carboxidovorans) - STRING interaction network

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def

Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. (171 aa)

Predicted Functional Partners:

rplT

0.979

rplU

0.968

rpsT

0.967

tig

0.966

rpsP

0.964

rpsJ

0.964

rpsU

0.964

rplX

0.962

rpmA

0.962

rplI

0.960

Your Current Organism:

Oligotropha carboxidovorans

NCBI taxonomy Id: 504832
Other names: O. carboxidovorans OM5, Oligotropha carboxidovorans OM5, Oligotropha carboxidovorans str. OM5, Oligotropha carboxidovorans strain OM5

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
def	rplI	OCA5_c06000	OCA5_c16700	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	50S ribosomal protein L9; Binds to the 23S rRNA.	0.960
def	rplT	OCA5_c06000	OCA5_c00910	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.979
def	rplU	OCA5_c06000	OCA5_c33340	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.968
def	rplX	OCA5_c06000	OCA5_c23190	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.962
def	rpmA	OCA5_c06000	OCA5_c33350	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.962
def	rpsJ	OCA5_c06000	OCA5_c23310	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.964
def	rpsP	OCA5_c06000	OCA5_c02510	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.964
def	rpsT	OCA5_c06000	OCA5_c34020	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.967
def	rpsU	OCA5_c06000	OCA5_c28630	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.964
def	tig	OCA5_c06000	OCA5_c21120	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	Trigger factor Tig; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.966
rplI	def	OCA5_c16700	OCA5_c06000	50S ribosomal protein L9; Binds to the 23S rRNA.	Peptide deformylase Def; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.	0.960
rplI	rplT	OCA5_c16700	OCA5_c00910	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.996
rplI	rplU	OCA5_c16700	OCA5_c33340	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.997
rplI	rplX	OCA5_c16700	OCA5_c23190	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L24; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.994
rplI	rpmA	OCA5_c16700	OCA5_c33350	50S ribosomal protein L9; Binds to the 23S rRNA.	50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.996
rplI	rpsJ	OCA5_c16700	OCA5_c23310	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.995
rplI	rpsP	OCA5_c16700	OCA5_c02510	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.	0.995
rplI	rpsT	OCA5_c16700	OCA5_c34020	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.978
rplI	rpsU	OCA5_c16700	OCA5_c28630	50S ribosomal protein L9; Binds to the 23S rRNA.	30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.987
rplI	tig	OCA5_c16700	OCA5_c21120	50S ribosomal protein L9; Binds to the 23S rRNA.	Trigger factor Tig; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily.	0.961

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