STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hmuVABC transporter, hemin import ATP-binding protein HmuV. (266 aa)    
Predicted Functional Partners:
hmuU
ABC transporter, hemin transport system permease protein HmuU; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.987
hmuT
ABC transporter, hemin-binding periplasmic protein HmuT.
 
 0.974
AEI05277.1
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.936
AEI08057.1
ABC transporter permease, FecCD family; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.935
AEI07597.1
ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  0.934
AEI08053.1
Periplasmic binding protein.
 
  0.846
AEI07596.1
ABC transporter substrate-binding protein.
 
  0.784
AEI07746.1
Hypothetical protein.
  
    0.783
AEI05278.1
ABC transporter substrate-binding protein.
 
  0.776
AEI07745.1
TonB-dependent heme/hemoglobin receptor.
 
  
 0.755
Your Current Organism:
Oligotropha carboxidovorans
NCBI taxonomy Id: 504832
Other names: O. carboxidovorans OM5, Oligotropha carboxidovorans OM5, Oligotropha carboxidovorans str. OM5, Oligotropha carboxidovorans strain OM5
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