STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI08055.1TonB-dependent siderophore receptor. (757 aa)    
Predicted Functional Partners:
AEI08054.1
Hypothetical protein.
       0.773
AEI08053.1
Periplasmic binding protein.
 
    0.764
AEI06063.1
PKHD-type hydroxylase.
 
    0.741
AEI05601.1
TonB dependent receptor protein.
  
  
 0.562
AEI06831.1
Hypothetical protein.
   
    0.441
AEI06786.1
TonB-dependent receptor.
  
  
 0.425
AEI05499.1
Hypothetical protein.
  
    0.424
Your Current Organism:
Oligotropha carboxidovorans
NCBI taxonomy Id: 504832
Other names: O. carboxidovorans OM5, Oligotropha carboxidovorans OM5, Oligotropha carboxidovorans str. OM5, Oligotropha carboxidovorans strain OM5
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.