Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SKB24770.1 | SKB28810.1 | SAMN06295997_10157 | SAMN06295997_103120 | Hypothetical protein. | Diadenosine tetraphosphate (Ap4A) hydrolase. | 0.428 |
SKB28791.1 | SKB28810.1 | SAMN06295997_103119 | SAMN06295997_103120 | Choline/glycine/proline betaine transport protein; Belongs to the BCCT transporter (TC 2.A.15) family. | Diadenosine tetraphosphate (Ap4A) hydrolase. | 0.608 |
SKB28810.1 | SKB24770.1 | SAMN06295997_103120 | SAMN06295997_10157 | Diadenosine tetraphosphate (Ap4A) hydrolase. | Hypothetical protein. | 0.428 |
SKB28810.1 | SKB28791.1 | SAMN06295997_103120 | SAMN06295997_103119 | Diadenosine tetraphosphate (Ap4A) hydrolase. | Choline/glycine/proline betaine transport protein; Belongs to the BCCT transporter (TC 2.A.15) family. | 0.608 |
SKB28810.1 | SKB61929.1 | SAMN06295997_103120 | SAMN06295997_12414 | Diadenosine tetraphosphate (Ap4A) hydrolase. | Superfamily II DNA or RNA helicase. | 0.566 |
SKB28810.1 | SKB68756.1 | SAMN06295997_103120 | SAMN06295997_13117 | Diadenosine tetraphosphate (Ap4A) hydrolase. | Superfamily II DNA or RNA helicase. | 0.653 |
SKB28810.1 | rpoA | SAMN06295997_103120 | SAMN06295997_103125 | Diadenosine tetraphosphate (Ap4A) hydrolase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.795 |
SKB28810.1 | rpoB | SAMN06295997_103120 | SAMN06295997_10133 | Diadenosine tetraphosphate (Ap4A) hydrolase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.497 |
SKB28810.1 | rpoC | SAMN06295997_103120 | SAMN06295997_10134 | Diadenosine tetraphosphate (Ap4A) hydrolase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.776 |
SKB28810.1 | rpoZ | SAMN06295997_103120 | SAMN06295997_11960 | Diadenosine tetraphosphate (Ap4A) hydrolase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.659 |
SKB28810.1 | rpsK | SAMN06295997_103120 | SAMN06295997_103123 | Diadenosine tetraphosphate (Ap4A) hydrolase. | Small subunit ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.415 |
SKB28810.1 | rpsM | SAMN06295997_103120 | SAMN06295997_103122 | Diadenosine tetraphosphate (Ap4A) hydrolase. | Small subunit ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.571 |
SKB61929.1 | SKB28810.1 | SAMN06295997_12414 | SAMN06295997_103120 | Superfamily II DNA or RNA helicase. | Diadenosine tetraphosphate (Ap4A) hydrolase. | 0.566 |
SKB61929.1 | SKB68756.1 | SAMN06295997_12414 | SAMN06295997_13117 | Superfamily II DNA or RNA helicase. | Superfamily II DNA or RNA helicase. | 0.436 |
SKB61929.1 | rpoA | SAMN06295997_12414 | SAMN06295997_103125 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.967 |
SKB61929.1 | rpoB | SAMN06295997_12414 | SAMN06295997_10133 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.951 |
SKB61929.1 | rpoC | SAMN06295997_12414 | SAMN06295997_10134 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.975 |
SKB61929.1 | rpoZ | SAMN06295997_12414 | SAMN06295997_11960 | Superfamily II DNA or RNA helicase. | DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.967 |
SKB68756.1 | SKB28810.1 | SAMN06295997_13117 | SAMN06295997_103120 | Superfamily II DNA or RNA helicase. | Diadenosine tetraphosphate (Ap4A) hydrolase. | 0.653 |
SKB68756.1 | SKB61929.1 | SAMN06295997_13117 | SAMN06295997_12414 | Superfamily II DNA or RNA helicase. | Superfamily II DNA or RNA helicase. | 0.436 |
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