Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
PabB | PheA | SAMN06295997_11169 | SAMN06295997_12618 | Para-aminobenzoate synthetase component 1. | Chorismate mutase. | 0.935 |
PabB | TrpE | SAMN06295997_11169 | SAMN06295997_11965 | Para-aminobenzoate synthetase component 1. | Anthranilate synthase, component I. | 0.855 |
PabB | TrpG | SAMN06295997_11169 | SAMN06295997_13031 | Para-aminobenzoate synthetase component 1. | Anthranilate synthase, component II. | 0.999 |
PabB | aroA | SAMN06295997_11169 | SAMN06295997_11556 | Para-aminobenzoate synthetase component 1. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.421 |
PabB | aroB | SAMN06295997_11169 | SAMN06295997_13214 | Para-aminobenzoate synthetase component 1. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.485 |
PabB | aroC | SAMN06295997_11169 | SAMN06295997_12533 | Para-aminobenzoate synthetase component 1. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.923 |
PabB | aroE | SAMN06295997_11169 | SAMN06295997_11725 | Para-aminobenzoate synthetase component 1. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.545 |
PabB | aroK | SAMN06295997_11169 | SAMN06295997_1128 | Para-aminobenzoate synthetase component 1. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.440 |
PheA | PabB | SAMN06295997_12618 | SAMN06295997_11169 | Chorismate mutase. | Para-aminobenzoate synthetase component 1. | 0.935 |
PheA | TrpE | SAMN06295997_12618 | SAMN06295997_11965 | Chorismate mutase. | Anthranilate synthase, component I. | 0.965 |
PheA | TrpG | SAMN06295997_12618 | SAMN06295997_13031 | Chorismate mutase. | Anthranilate synthase, component II. | 0.966 |
PheA | TyrA | SAMN06295997_12618 | SAMN06295997_12813 | Chorismate mutase. | Prephenate dehydrogenase. | 0.981 |
PheA | aroA | SAMN06295997_12618 | SAMN06295997_11556 | Chorismate mutase. | 3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate. | 0.951 |
PheA | aroB | SAMN06295997_12618 | SAMN06295997_13214 | Chorismate mutase. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.740 |
PheA | aroC | SAMN06295997_12618 | SAMN06295997_12533 | Chorismate mutase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.993 |
PheA | aroE | SAMN06295997_12618 | SAMN06295997_11725 | Chorismate mutase. | Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.764 |
PheA | aroK | SAMN06295997_12618 | SAMN06295997_1128 | Chorismate mutase. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.801 |
Por | aroC | SAMN06295997_1204 | SAMN06295997_12533 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Chorismate synthase; Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system. | 0.923 |
TrpE | PabB | SAMN06295997_11965 | SAMN06295997_11169 | Anthranilate synthase, component I. | Para-aminobenzoate synthetase component 1. | 0.855 |
TrpE | PheA | SAMN06295997_11965 | SAMN06295997_12618 | Anthranilate synthase, component I. | Chorismate mutase. | 0.965 |
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