STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB65385.1Cytochrome c peroxidase. (389 aa)    
Predicted Functional Partners:
SKB65182.1
CxxC motif-containing protein, DUF1111 family.
 
     0.853
SKB65138.1
Putative iron-regulated protein.
 
     0.851
SKB65368.1
Sterol desaturase/sphingolipid hydroxylase, fatty acid hydroxylase superfamily.
 
     0.811
SKB65351.1
Imelysin.
       0.783
SKB65417.1
3-oxoacyl-[acyl-carrier protein] reductase.
  
    0.505
msrA
Peptide methionine sulfoxide reductase msrA/msrB; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.503
SKB65123.1
Hypothetical protein.
       0.461
Your Current Organism:
Arcobacter marinus
NCBI taxonomy Id: 505249
Other names: Arcobacter marinus Kim et al. 2010, Arcobacter sp. CECT 7727, Arcobacter sp. CL-S1, JCM 15502, KCCM 90072, Malacobacter marinus, strain CL-S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.