STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SKB72148.1C4-dicarboxylate transporter, DctM subunit. (426 aa)    
Predicted Functional Partners:
SKB72165.1
C4-dicarboxylate transporter, DctQ subunit.
 
 
 0.967
SKB72175.1
C4-dicarboxylate-binding protein DctP.
  
 0.961
SKB27508.1
TRAP transporter, DctM subunit.
  
  
 
0.915
SKB38870.1
TRAP transporter, DctM subunit.
  
  
 
0.915
SKB27489.1
TRAP-type C4-dicarboxylate transport system, substrate-binding protein.
 
  
 0.795
SKB38838.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
  
 0.779
SKB38852.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.563
SKB72119.1
Hypothetical protein.
       0.561
SKB27497.1
TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
 0.494
Your Current Organism:
Arcobacter marinus
NCBI taxonomy Id: 505249
Other names: Arcobacter marinus Kim et al. 2010, Arcobacter sp. CECT 7727, Arcobacter sp. CL-S1, JCM 15502, KCCM 90072, Malacobacter marinus, strain CL-S1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.