STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KGQ69834.1Flavodoxin FldA; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family. (174 aa)    
Predicted Functional Partners:
KGQ69833.1
LexA family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.823
fur
Fur family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Fur family.
  
  
 0.670
seqA
Replication initiation regulator SeqA; Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated.
 
  
 0.573
KGQ69832.1
acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.565
KGQ71485.1
Lipoprotein NlpI-like protein; May be involved in cell division.
  
     0.424
Your Current Organism:
Chelonobacter oris
NCBI taxonomy Id: 505317
Other names: C. oris, CCUG 55632, Chelonobacter oris Gregersen et al. 2009, DSM 21392, Pasteurellaceae bacterium 11321, Pasteurellaceae bacterium 17123, Pasteurellaceae bacterium 18043, Pasteurellaceae bacterium 8484
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.