STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OBX04480.1Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)    
Predicted Functional Partners:
OBX04479.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.992
OBX04478.1
Exopolyphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GppA/Ppx family.
       0.750
lptD
LPS biosynthesis protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
   
 0.695
OBX04481.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.535
OBX04548.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.518
OBX06050.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.508
OBX04823.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.447
OBX03220.1
Lipopolysaccharide ABC transporter permease; With LptBGC is involved in lipopolysaccharide export; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.443
tolB
Translocation protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
     0.434
Your Current Organism:
Gallibacterium genomosp. 3
NCBI taxonomy Id: 505345
Other names: G. genomosp. 3, Gallibacterium columbinum, Gallibacterium genomospecies 3, Gallibacterium sp. 282/S4/90, Gallibacterium sp. 3565/S2/89, Gallibacterium sp. 59/S3/89, Gallibacterium sp. F151, Gallibacterium sp. F298, Gallibacterium sp. F448
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.