STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EGM79117.1Flp pilus assembly protein TadD; PFAM: Sulfotransferase domain; Tetratricopeptide repeat. (526 aa)    
Predicted Functional Partners:
EGM78773.1
PFAM: Tetratricopeptide repeat.
  
 0.954
EGM79116.1
Outer membrane receptor protein; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain.
 
     0.881
EGM79494.1
PFAM: HAMP domain; Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; Hpt domain.
   
 0.846
EGM77499.1
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein; PFAM: Response regulator receiver domain; Hpt domain.
   
 0.846
alaS
alanine--tRNA ligase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.791
EGM77532.1
Putative transmembrane sensor domain protein; PFAM: Adenylate and Guanylate cyclase catalytic domain; CHASE2 domain.
   
 0.776
EGM79428.1
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain protein; PFAM: Response regulator receiver domain.
   
 0.775
EGM78778.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; Uncharacterized signal transduction histidine kinase domain (DUF2222); Hpt domain.
   
 0.775
EGM79733.1
PAS domain S-box/PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box.
   
 0.771
EGM78928.1
PAS domain S-box/PAS domain S-box; PFAM: Response regulator receiver domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; CHASE domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box.
   
 0.771
Your Current Organism:
Rheinheimera sp. A13L
NCBI taxonomy Id: 506534
Other names: R. sp. A13L
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.