node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGM77679.1 | rplF | Rhein_2239 | Rhein_2246 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.999 |
EGM77679.1 | rplO | Rhein_2239 | Rhein_2242 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
EGM77679.1 | rplR | Rhein_2239 | Rhein_2245 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
EGM77679.1 | rpmD | Rhein_2239 | Rhein_2243 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. | 0.998 |
EGM77679.1 | rpsD | Rhein_2239 | Rhein_2237 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
EGM77679.1 | rpsE | Rhein_2239 | Rhein_2244 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
EGM77679.1 | rpsH | Rhein_2239 | Rhein_2247 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
EGM77679.1 | rpsK | Rhein_2239 | Rhein_2238 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
EGM77679.1 | rpsN | Rhein_2239 | Rhein_2248 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
EGM77679.1 | secY | Rhein_2239 | Rhein_2241 | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.998 |
rplF | EGM77679.1 | Rhein_2246 | Rhein_2239 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | PFAM: Ribosomal protein S13/S18; TIGRFAM: 30S ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. | 0.999 |
rplF | rplO | Rhein_2246 | Rhein_2242 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L15, bacterial/organelle; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.999 |
rplF | rplR | Rhein_2246 | Rhein_2245 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein L18, bacterial type; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. | 0.999 |
rplF | rpmD | Rhein_2246 | Rhein_2243 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | PFAM: Ribosomal protein L30p/L7e; TIGRFAM: ribosomal protein L30, bacterial/organelle. | 0.999 |
rplF | rpsD | Rhein_2246 | Rhein_2237 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S4, bacterial/organelle type; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.998 |
rplF | rpsE | Rhein_2246 | Rhein_2244 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S5, bacterial/organelle type; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplF | rpsH | Rhein_2246 | Rhein_2247 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rplF | rpsK | Rhein_2246 | Rhein_2238 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.998 |
rplF | rpsN | Rhein_2246 | Rhein_2248 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.999 |
rplF | secY | Rhein_2246 | Rhein_2241 | Ribosomal protein L6, bacterial type; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | Preprotein translocase, SecY subunit; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.999 |