GAU81140.1 protein (Bosea sp. BIWAKO01) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

GAU81140.1

Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family. (481 aa)

Predicted Functional Partners:

GAU82754.1

0.824

GAU82905.1

0.815

GAU86017.1

0.810

GAU82878.1

0.802

GAU83097.1

0.798

GAU80769.1

0.785

GAU81866.1

0.785

GAU86626.1

0.772

GAU80460.1

0.768

GAU84647.1

0.768

Your Current Organism:

Bosea sp. BIWAKO01

NCBI taxonomy Id: 506668
Other names: B. sp. BIWAKO-01, Bosea sp. BIWAKO-01

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GAU80460.1	GAU80769.1	BIWAKO_00346	BIWAKO_00659	4-hydroxyphenylpyruvate dioxygenase.	NADP-dependent malic enzyme.	0.466
GAU80460.1	GAU81140.1	BIWAKO_00346	BIWAKO_01031	4-hydroxyphenylpyruvate dioxygenase.	Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family.	0.768
GAU80460.1	GAU81866.1	BIWAKO_00346	BIWAKO_01768	4-hydroxyphenylpyruvate dioxygenase.	NADP-dependent malic enzyme.	0.466
GAU80460.1	GAU82905.1	BIWAKO_00346	BIWAKO_02828	4-hydroxyphenylpyruvate dioxygenase.	Malonyl CoA-acyl carrier protein transacylase.	0.840
GAU80460.1	GAU83097.1	BIWAKO_00346	BIWAKO_03020	4-hydroxyphenylpyruvate dioxygenase.	Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.427
GAU80460.1	GAU84647.1	BIWAKO_00346	BIWAKO_04584	4-hydroxyphenylpyruvate dioxygenase.	4-hydroxyphenylpyruvate dioxygenase.	0.761
GAU80460.1	GAU86626.1	BIWAKO_00346	BIWAKO_06574	4-hydroxyphenylpyruvate dioxygenase.	Non-ribosomal peptide synthetase.	0.844
GAU80769.1	GAU80460.1	BIWAKO_00659	BIWAKO_00346	NADP-dependent malic enzyme.	4-hydroxyphenylpyruvate dioxygenase.	0.466
GAU80769.1	GAU81140.1	BIWAKO_00659	BIWAKO_01031	NADP-dependent malic enzyme.	Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family.	0.785
GAU80769.1	GAU81866.1	BIWAKO_00659	BIWAKO_01768	NADP-dependent malic enzyme.	NADP-dependent malic enzyme.	0.832
GAU80769.1	GAU82754.1	BIWAKO_00659	BIWAKO_02676	NADP-dependent malic enzyme.	Aminotransferase.	0.756
GAU80769.1	GAU82878.1	BIWAKO_00659	BIWAKO_02800	NADP-dependent malic enzyme.	NADPH-dependent glutamate synthase large chain.	0.516
GAU80769.1	GAU82905.1	BIWAKO_00659	BIWAKO_02828	NADP-dependent malic enzyme.	Malonyl CoA-acyl carrier protein transacylase.	0.886
GAU80769.1	GAU83097.1	BIWAKO_00659	BIWAKO_03020	NADP-dependent malic enzyme.	Proline dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.	0.464
GAU80769.1	GAU84647.1	BIWAKO_00659	BIWAKO_04584	NADP-dependent malic enzyme.	4-hydroxyphenylpyruvate dioxygenase.	0.466
GAU80769.1	GAU86626.1	BIWAKO_00659	BIWAKO_06574	NADP-dependent malic enzyme.	Non-ribosomal peptide synthetase.	0.792
GAU81140.1	GAU80460.1	BIWAKO_01031	BIWAKO_00346	Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family.	4-hydroxyphenylpyruvate dioxygenase.	0.768
GAU81140.1	GAU80769.1	BIWAKO_01031	BIWAKO_00659	Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family.	NADP-dependent malic enzyme.	0.785
GAU81140.1	GAU81866.1	BIWAKO_01031	BIWAKO_01768	Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family.	NADP-dependent malic enzyme.	0.785
GAU81140.1	GAU82754.1	BIWAKO_01031	BIWAKO_02676	Aldehyde dehydrogenase B; Belongs to the aldehyde dehydrogenase family.	Aminotransferase.	0.824