STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GAU86308.1Transcriptional regulator of AraC family. (333 aa)    
Predicted Functional Partners:
GAU86683.1
Sensory histidine kinase.
    
 0.731
GAU81866.1
NADP-dependent malic enzyme.
  
  
  0.708
GAU82878.1
NADPH-dependent glutamate synthase large chain.
    
  0.704
GAU80769.1
NADP-dependent malic enzyme.
  
  
  0.699
GAU86152.1
Transcriptional regulator of AraC family.
  
     0.680
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.672
GAU86307.1
Acid phosphatase.
 
     0.670
rpoA
DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.638
GAU85181.1
TP901 family phage tail tape measure protein.
  
     0.628
GAU86309.1
Transcriptional regulator of AraC family.
 
     0.600
Your Current Organism:
Bosea sp. BIWAKO01
NCBI taxonomy Id: 506668
Other names: B. sp. BIWAKO-01, Bosea sp. BIWAKO-01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.