STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43411.1iron(III) ABC transporter, permease protein, putative; COG0609 ABC-type Fe3+-siderophore transport system, permease component; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily. (344 aa)    
Predicted Functional Partners:
EDM43412.1
iron(III) ABC transporter, ATP-binding protein, putative; COG1120 ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components.
 0.999
EDM43410.1
Putative iron-related ABC transport periplasmic binding protein; COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
 0.994
EDM44891.1
COG0614 ABC-type Fe3+-hydroxamate transport system, periplasmic component.
 
 0.982
EDM45457.1
Zinc ABC transporter, ATP-binding protein; COG1121 ABC-type Mn/Zn transport systems, ATPase component.
 
    
 0.549
EDM43413.1
COG1322 Uncharacterized protein conserved in bacteria.
       0.534
EDM44862.1
Phosphoenolpyruvate-protein phosphotransferase; COG3412 Uncharacterized protein conserved in bacteria; Belongs to the PEP-utilizing enzyme family.
 
   
 0.484
EDM45440.1
Transcriptional regulator; COG2207 AraC-type DNA-binding domain-containing proteins.
  
    0.416
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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