Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EDM43426.1Oligopeptide ABC transporter, solute-binding protein; COG0747 ABC-type dipeptide transport system, periplasmic component. (533 aa)    
Predicted Functional Partners:
EDM45037.1
COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 0.997
EDM45186.1
COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components.
 
 0.997
EDM45421.1
ABC transporter, ATP-binding protein; COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
 0.987
EDM42980.1
ABC transporter permease protein; COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
     
  0.793
EDM44212.1
Hypothetical protein; COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
     
  0.793
EDM43912.1
Hypothetical protein; COG0795 Predicted permeases.
     
  0.793
EDM42934.1
Hypothetical protein; COG0795 Predicted permeases.
     
  0.793
EDM45285.1
Multiple sugar-binding ABC transporter, ATP-binding protein; COG3842 ABC-type spermidine/putrescine transport systems, ATPase components.
    
  0.790
EDM43427.1
Hypothetical protein; COG2319 FOG: WD40 repeat.
       0.773
EDM44491.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
     
 0.760
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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