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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43431.1Aminotransferase; COG0520 Selenocysteine lyase. (501 aa)    
Predicted Functional Partners:
EDM45513.1
COG2166 SufE protein probably involved in Fe-S center assembly.
  
 0.887
EDM45516.1
Iron-regulated ABC transporter, ATP-binding protein; COG0396 ABC-type transport system involved in Fe-S cluster assembly, ATPase component.
 
 
 0.742
EDM45645.1
COG0476 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2.
  
 
 0.736
EDM44949.1
Hypothetical protein; COG0708 Exonuclease III.
    
   0.731
EDM44754.1
Endonuclease/exonuclease/phosphatase family protein; COG0708 Exonuclease III.
    
   0.731
EDM45515.1
Iron-regulated ABC transporter, membrane-spanning permease; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 0.704
EDM45518.1
Iron-regulated ABC transporter, membrane-spanning permease; COG0719 ABC-type transport system involved in Fe-S cluster assembly, permease component.
 
 0.704
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.673
EDM43467.1
Metallo-beta-lactamase superfamily protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
  0.612
EDM45006.1
Rhodanese-like protein; COG0491 Zn-dependent hydrolases, including glyoxylases.
    
  0.612
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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