Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EDM43279.1 | EDM43439.1 | SCB49_00952 | SCB49_00280 | Riboflavin biosynthesis protein ribD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | Hypothetical protein. | 0.695 |
EDM43438.1 | EDM43439.1 | SCB49_00275 | SCB49_00280 | Hypothetical protein. | Hypothetical protein. | 0.551 |
EDM43439.1 | EDM43279.1 | SCB49_00280 | SCB49_00952 | Hypothetical protein. | Riboflavin biosynthesis protein ribD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.695 |
EDM43439.1 | EDM43438.1 | SCB49_00280 | SCB49_00275 | Hypothetical protein. | Hypothetical protein. | 0.551 |
EDM43439.1 | EDM43440.1 | SCB49_00280 | SCB49_00285 | Hypothetical protein. | COG3296 Uncharacterized protein conserved in bacteria. | 0.496 |
EDM43439.1 | EDM43586.1 | SCB49_00280 | SCB49_08348 | Hypothetical protein. | phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | 0.668 |
EDM43439.1 | EDM43797.1 | SCB49_00280 | SCB49_09405 | Hypothetical protein. | Hypothetical protein. | 0.508 |
EDM43439.1 | EDM44279.1 | SCB49_00280 | SCB49_04600 | Hypothetical protein. | Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.638 |
EDM43439.1 | EDM45257.1 | SCB49_00280 | SCB49_05607 | Hypothetical protein. | Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | 0.668 |
EDM43439.1 | EDM45552.1 | SCB49_00280 | SCB49_07082 | Hypothetical protein. | Hypothetical protein. | 0.562 |
EDM43439.1 | menA | SCB49_00280 | SCB49_10262 | Hypothetical protein. | 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Conversion of 1,4-dihydroxy-2-naphthoate (DHNA) to demethylmenaquinone (DMK); Belongs to the MenA family. Type 1 subfamily. | 0.571 |
EDM43439.1 | menB | SCB49_00280 | SCB49_14235 | Hypothetical protein. | Naphthoate synthase (dihydroxynaphtoic acid synthetase); Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA); Belongs to the enoyl-CoA hydratase/isomerase family. MenB subfamily. | 0.566 |
EDM43440.1 | EDM43439.1 | SCB49_00285 | SCB49_00280 | COG3296 Uncharacterized protein conserved in bacteria. | Hypothetical protein. | 0.496 |
EDM43586.1 | EDM43439.1 | SCB49_08348 | SCB49_00280 | phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | Hypothetical protein. | 0.668 |
EDM43586.1 | EDM44279.1 | SCB49_08348 | SCB49_04600 | phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | 0.987 |
EDM43586.1 | EDM45257.1 | SCB49_08348 | SCB49_05607 | phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | 0.713 |
EDM43797.1 | EDM43439.1 | SCB49_09405 | SCB49_00280 | Hypothetical protein. | Hypothetical protein. | 0.508 |
EDM44279.1 | EDM43439.1 | SCB49_04600 | SCB49_00280 | Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Hypothetical protein. | 0.638 |
EDM44279.1 | EDM43586.1 | SCB49_04600 | SCB49_08348 | Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | phenylacetate-CoA oxygenase, PaaK subunit; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | 0.987 |
EDM44279.1 | EDM45257.1 | SCB49_04600 | SCB49_05607 | Molybdopterin oxidoreductase, iron-sulfur binding subunit; COG0243 Anaerobic dehydrogenases, typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. | Ferredoxin; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases) family 1. | 0.987 |
page 1 of 2