Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43440.1COG3296 Uncharacterized protein conserved in bacteria. (176 aa)    
Predicted Functional Partners:
EDM43443.1
Hypothetical protein; COG1983 Putative stress-responsive transcriptional regulator.
 
    0.888
EDM43442.1
Hypothetical protein; COG1695 Predicted transcriptional regulators.
       0.806
EDM43441.1
Hypothetical protein.
       0.773
EDM44798.1
COG3296 Uncharacterized protein conserved in bacteria.
  
     0.757
EDM42891.1
Hypothetical protein.
  
     0.603
EDM44570.1
Hypothetical protein.
  
     0.586
EDM43024.1
COG0308 Aminopeptidase N.
  
     0.573
EDM43439.1
Hypothetical protein.
       0.526
EDM45673.1
Hypothetical protein.
  
     0.524
pyrF
COG0284 Orotidine-5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
     
  0.516
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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