Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43443.1Hypothetical protein; COG1983 Putative stress-responsive transcriptional regulator. (596 aa)    
Predicted Functional Partners:
EDM43442.1
Hypothetical protein; COG1695 Predicted transcriptional regulators.
     0.924
EDM43440.1
COG3296 Uncharacterized protein conserved in bacteria.
 
    0.888
EDM43441.1
Hypothetical protein.
       0.773
EDM45699.1
Hypothetical protein.
  
    0.747
EDM45221.1
COG0642 Signal transduction histidine kinase.
  
   0.679
EDM44338.1
Histidine kinase; COG0642 Signal transduction histidine kinase.
   
   0.630
EDM45534.1
Hybrid sensory kinase; COG0642 Signal transduction histidine kinase.
   
   0.630
EDM43866.1
Two-component system sensor histidine kinase; COG0642 Signal transduction histidine kinase.
   
   0.630
EDM44646.1
Transcriptional regulator, MarR family protein; COG1846 Transcriptional regulators.
 
   
 0.597
EDM44984.1
Hypothetical protein.
  
     0.566
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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