Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43455.1COG2120 Uncharacterized proteins, LmbE homologs. (829 aa)    
Predicted Functional Partners:
EDM43457.1
Transporter, solute:sodium symporter (SSS) family protein; COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.899
EDM43504.1
Hypothetical protein; COG0457 FOG: TPR repeat.
  
     0.768
bshC
COG4365 Uncharacterized protein conserved in bacteria; Belongs to the BshC family.
 
  
 0.762
EDM44832.1
COG1198 Primosomal protein N' (replication factor Y) - superfamily II helicase.
  
     0.622
cysS
COG0215 Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
 
 0.569
maf
Maf-like protein; Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.
       0.533
hisD
Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine.
     
  0.507
EDM45340.1
Hypothetical protein.
  
     0.488
EDM43087.1
A-glycosyltransferase-related protein, glycosyltransferase family 4 protein; COG0438 Glycosyltransferase.
  
 
  0.482
EDM43452.1
Putative lipopolysaccharide biosynthesis-related protein; COG1778 Low specificity phosphatase (HAD superfamily).
 
     0.466
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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