STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43487.1B-glycosyltransferase, glycosyltransferase family 2 protein; COG1216 Predicted glycosyltransferases. (331 aa)    
Predicted Functional Partners:
EDM45557.1
Bifunctional protein: riboflavin kinase; COG0196 FAD synthase; Belongs to the ribF family.
      0.831
EDM45357.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 
  0.685
EDM45356.1
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
 
  
 0.585
EDM43961.1
Hypothetical protein; COG1466 DNA polymerase III, delta subunit.
 
     0.580
EDM43488.1
Putative flagellar motor protein MotB; COG1196 Chromosome segregation ATPases.
       0.549
bshC
COG4365 Uncharacterized protein conserved in bacteria; Belongs to the BshC family.
       0.545
EDM45300.1
COG0307 Riboflavin synthase alpha chain.
    
  0.530
EDM43270.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.507
EDM43430.1
Putative lipd A biosynthesis related exported protein; COG1560 Lauroyl/myristoyl acyltransferase.
 
    0.500
EDM43960.1
Hypothetical protein.
 
     0.419
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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