STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43508.1UDP-N-acetylglucosamine 1-carboxyvinyltransferase; COG0419 ATPase involved in DNA repair. (191 aa)    
Predicted Functional Partners:
EDM43031.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
  
     0.691
EDM43163.1
Hypothetical protein; COG0760 Parvulin-like peptidyl-prolyl isomerase.
  
     0.670
EDM43035.1
Hypothetical protein.
  
     0.647
EDM44097.1
COG0507 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member.
  
     0.598
EDM44096.1
Hypothetical protein.
  
     0.581
EDM43264.1
Hypothetical protein.
  
     0.571
EDM45706.1
COG2982 Uncharacterized protein involved in outer membrane biogenesis.
  
     0.564
EDM43339.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.546
EDM43507.1
COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
       0.542
EDM44262.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
     0.513
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.