EDM43523.1 protein (unidentified eubacterium SCB49)

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Score

EDM43523.1

COG0488 ATPase components of ABC transporters with duplicated ATPase domains. (538 aa)

Predicted Functional Partners:

rpsI

0.818

rplU

0.805

rpsO-2

0.803

rpsC

0.803

rplM

0.802

rplC

0.798

rpmH

0.797

rplR

0.797

rpmF

0.795

rplW

0.795

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM43523.1	rplC	SCB49_00700	SCB49_09500	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.798
EDM43523.1	rplM	SCB49_00700	SCB49_04700	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.802
EDM43523.1	rplR	SCB49_00700	SCB49_09580	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.797
EDM43523.1	rplU	SCB49_00700	SCB49_07602	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.805
EDM43523.1	rplW	SCB49_00700	SCB49_09510	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.795
EDM43523.1	rpmF	SCB49_00700	SCB49_05807	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.795
EDM43523.1	rpmH	SCB49_00700	SCB49_00175	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Thiol-disulfide oxidoreductase; Belongs to the bacterial ribosomal protein bL34 family.	0.797
EDM43523.1	rpsC	SCB49_00700	SCB49_09530	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.803
EDM43523.1	rpsI	SCB49_00700	SCB49_04705	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.818
EDM43523.1	rpsO-2	SCB49_00700	SCB49_09305	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	Putative 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.803
rplC	EDM43523.1	SCB49_09500	SCB49_00700	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0488 ATPase components of ABC transporters with duplicated ATPase domains.	0.798
rplC	rplM	SCB49_09500	SCB49_04700	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplR	SCB49_09500	SCB49_09580	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.999
rplC	rplU	SCB49_09500	SCB49_07602	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.999
rplC	rplW	SCB49_09500	SCB49_09510	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.	0.999
rplC	rpmF	SCB49_09500	SCB49_05807	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.999
rplC	rpmH	SCB49_09500	SCB49_00175	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Thiol-disulfide oxidoreductase; Belongs to the bacterial ribosomal protein bL34 family.	0.999
rplC	rpsC	SCB49_09500	SCB49_09530	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.999
rplC	rpsI	SCB49_09500	SCB49_04705	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplC	rpsO-2	SCB49_09500	SCB49_09305	50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	Putative 30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.999