STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43529.1Putative outer membrane protein, probably involved in nutrient binding. (313 aa)    
Predicted Functional Partners:
EDM43528.1
Hypothetical protein.
 
     0.816
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
  0.719
EDM43558.1
TonB; COG0810 Periplasmic protein TonB, links inner and outer membranes.
  
  0.663
EDM44252.1
Putative TonB-dependent transmembrane receptor protein; COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.607
EDM45683.1
Hypothetical protein.
   
  0.588
EDM44810.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
  
  0.576
EDM43930.1
COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
 
  0.559
EDM45176.1
COG0589 Universal stress protein UspA and related nucleotide-binding proteins.
  
     0.545
EDM43809.1
Putative outer membrane receptor protein.
 
     0.520
EDM43195.1
Hypothetical protein.
  
 
  0.517
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.