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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43250.1Hypothetical protein. (825 aa)    
Predicted Functional Partners:
EDM45509.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
  
  0.673
EDM43311.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
 
  
  0.628
EDM44295.1
Lipase (putative secreted protein); COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases.
  
  
  0.600
EDM43539.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
    
  0.576
EDM42947.1
Enterobacterial common antigen (ECA) biosynthesis protein; COG2244 Membrane protein involved in the export of O-antigen and teichoic acid.
  
     0.485
EDM45022.1
COG4771 Outer membrane receptor for ferrienterochelin and colicins.
  
     0.460
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.455
EDM43435.1
Hypothetical protein; COG1117 ABC-type phosphate transport system, ATPase component.
  
  
  0.447
EDM45665.1
COG1538 Outer membrane protein.
  
     0.439
EDM44501.1
Hypothetical protein.
  
     0.426
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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