STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43254.1COG1250 3-hydroxyacyl-CoA dehydrogenase. (296 aa)    
Predicted Functional Partners:
EDM45447.1
COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.
  0.994
EDM44649.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 0.983
EDM43591.1
COG1024 Enoyl-CoA hydratase/carnithine racemase.
  0.973
EDM43596.1
Beta-ketoadipyl CoA thiolase; COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.964
EDM44119.1
COG0183 Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 0.953
EDM43681.1
COG1960 Acyl-CoA dehydrogenases.
  0.873
EDM45073.1
bytyryl-CoA dehydrogenase (short-chain-acyl-CoA dehydrogenase); COG1960 Acyl-CoA dehydrogenases.
  0.848
EDM44647.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
 
 
0.841
EDM45419.1
COG2057 Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit.
  
 
 0.839
EDM44650.1
COG1960 Acyl-CoA dehydrogenases.
 
  0.824
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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