STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43264.1Hypothetical protein. (316 aa)    
Predicted Functional Partners:
coaE
Putative dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
  
    0.816
EDM43265.1
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
       0.798
dacA
Putative transmembrane protein; Catalyzes the condensation of 2 ATP molecules into cyclic di- AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria.
 
  
 0.729
EDM44120.1
Putative transmembrane HD family protein; COG1480 Predicted membrane-associated HD superfamily hydrolase.
  
  
 0.712
EDM43271.1
TPR repeat protein; COG4105 DNA uptake lipoprotein.
 
     0.645
EDM43268.1
Hypothetical protein.
 
     0.596
EDM43262.1
Two-component system sensor histidine kinase; COG0642 Signal transduction histidine kinase.
       0.592
EDM43266.1
COG0623 Enoyl-[acyl-carrier-protein] reductase (NADH).
       0.589
EDM43270.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
     0.587
EDM43261.1
Two-component system, transcriptional regulatory protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
       0.580
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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