Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43271.1TPR repeat protein; COG4105 DNA uptake lipoprotein. (266 aa)    
Predicted Functional Partners:
EDM45690.1
COG4775 Outer membrane protein/protective antigen OMA87.
 
 0.989
EDM43270.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
 
 
   0.939
EDM43883.1
Hypothetical protein.
  
 0.938
EDM45058.1
Putative outer membrane protein; COG2067 Long-chain fatty acid transport protein.
  
 
 
 0.929
EDM45583.1
Outer membrane lipoprotein, putative; COG3210 Large exoproteins involved in heme utilization or adhesion.
   
 0.929
EDM43268.1
Hypothetical protein.
 
     0.908
EDM43780.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
 0.905
EDM43811.1
Outer membrane protein; COG0419 ATPase involved in DNA repair.
  
 0.905
EDM43220.1
Outer membrane protein; COG1409 Predicted phosphohydrolases.
  
 0.905
EDM45616.1
Hypothetical protein.
  
  0.843
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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