EDM43291.1 protein (unidentified eubacterium SCB49)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EDM43291.1

COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. (459 aa)

Predicted Functional Partners:

secD

0.883

EDM42919.1

0.783

EDM43686.1

0.764

EDM44752.1

0.714

EDM45097.1

0.688

EDM44333.1

0.688

EDM44434.1

0.688

EDM45565.1

0.688

rpsF

0.685

rplK

0.645

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM42919.1	EDM43291.1	SCB49_11502	SCB49_01012	Hypothetical protein; COG0457 FOG: TPR repeat.	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	0.783
EDM42919.1	EDM44333.1	SCB49_11502	SCB49_04870	Hypothetical protein; COG0457 FOG: TPR repeat.	Ankyrin; COG0666 FOG: Ankyrin repeat.	0.676
EDM42919.1	EDM44434.1	SCB49_11502	SCB49_05375	Hypothetical protein; COG0457 FOG: TPR repeat.	Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.617
EDM42919.1	EDM45097.1	SCB49_11502	SCB49_03214	Hypothetical protein; COG0457 FOG: TPR repeat.	Hypothetical protein.	0.617
EDM42919.1	EDM45565.1	SCB49_11502	SCB49_07147	Hypothetical protein; COG0457 FOG: TPR repeat.	Hypothetical protein; COG0666 FOG: Ankyrin repeat.	0.617
EDM43291.1	EDM42919.1	SCB49_01012	SCB49_11502	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	Hypothetical protein; COG0457 FOG: TPR repeat.	0.783
EDM43291.1	EDM43686.1	SCB49_01012	SCB49_08848	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	COG2176 DNA polymerase III, alpha subunit (gram-positive type).	0.764
EDM43291.1	EDM44333.1	SCB49_01012	SCB49_04870	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	Ankyrin; COG0666 FOG: Ankyrin repeat.	0.688
EDM43291.1	EDM44434.1	SCB49_01012	SCB49_05375	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	0.688
EDM43291.1	EDM44752.1	SCB49_01012	SCB49_14310	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	COG0681 Signal peptidase I; Belongs to the peptidase S26 family.	0.714
EDM43291.1	EDM45097.1	SCB49_01012	SCB49_03214	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	Hypothetical protein.	0.688
EDM43291.1	EDM45565.1	SCB49_01012	SCB49_07147	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	Hypothetical protein; COG0666 FOG: Ankyrin repeat.	0.688
EDM43291.1	rplK	SCB49_01012	SCB49_01167	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.645
EDM43291.1	rpsF	SCB49_01012	SCB49_12044	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.	0.685
EDM43291.1	secD	SCB49_01012	SCB49_01864	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	Protein-export membrane protein SecD/SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.	0.883
EDM43686.1	EDM43291.1	SCB49_08848	SCB49_01012	COG2176 DNA polymerase III, alpha subunit (gram-positive type).	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	0.764
EDM44333.1	EDM42919.1	SCB49_04870	SCB49_11502	Ankyrin; COG0666 FOG: Ankyrin repeat.	Hypothetical protein; COG0457 FOG: TPR repeat.	0.676
EDM44333.1	EDM43291.1	SCB49_04870	SCB49_01012	Ankyrin; COG0666 FOG: Ankyrin repeat.	COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.	0.688
EDM44333.1	EDM45565.1	SCB49_04870	SCB49_07147	Ankyrin; COG0666 FOG: Ankyrin repeat.	Hypothetical protein; COG0666 FOG: Ankyrin repeat.	0.405
EDM44434.1	EDM42919.1	SCB49_05375	SCB49_11502	Hypothetical protein; COG2804 Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB.	Hypothetical protein; COG0457 FOG: TPR repeat.	0.617