STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43299.1COG4270 Predicted membrane protein. (117 aa)    
Predicted Functional Partners:
EDM43300.1
2OG-Fe(II) oxygenase; COG3145 Alkylated DNA repair protein.
       0.783
EDM43298.1
Hypothetical protein.
       0.773
EDM43297.1
Hyalin repeat protein; COG5295 Autotransporter adhesin.
       0.517
EDM45502.1
Hypothetical protein; COG0451 Nucleoside-diphosphate-sugar epimerases.
  
     0.443
EDM43295.1
Hypothetical protein.
       0.432
EDM43296.1
Ribosomal large subunit pseudouridine synthase D; COG0564 Pseudouridylate synthases, 23S RNA-specific.
       0.432
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.