Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43305.1Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family). (88 aa)    
Predicted Functional Partners:
EDM43287.1
Hypothetical protein.
  
     0.774
EDM45250.1
Hypothetical protein.
  
     0.771
EDM43047.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.771
EDM45251.1
COG1272 Predicted membrane protein, hemolysin III homolog.
  
     0.769
EDM43524.1
Fructose-6-phosphate aldolase 2; COG1225 Peroxiredoxin.
  
     0.768
EDM44012.1
Fused predicted transporter subunit of ABC superfamily: ATP-binding component.
  
     0.765
EDM45603.1
Hypothetical protein; COG3577 Predicted aspartyl protease.
  
     0.761
valS
valyl-tRNA synthetase; COG4281 Acyl-CoA-binding protein.
  
     0.742
EDM44364.1
Hypothetical protein; COG0064 Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog).
  
     0.730
EDM43304.1
Hypothetical protein; COG1812 Archaeal S-adenosylmethionine synthetase.
  
     0.729
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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