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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43309.1Isopentenyl-diphosphate delta-isomerase; COG1443 Isopentenyldiphosphate isomerase. (172 aa)    
Predicted Functional Partners:
EDM45117.1
Hypothetical protein; COG3407 Mevalonate pyrophosphate decarboxylase.
 
 
 0.901
EDM43369.1
COG1562 Phytoene/squalene synthetase.
 
 
 0.811
EDM43306.1
COG1482 Phosphomannose isomerase.
       0.792
EDM43308.1
COG0720 6-pyruvoyl-tetrahydropterin synthase.
       0.792
EDM43072.1
Hypothetical protein.
  
 
 0.789
EDM43307.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; COG1225 Peroxiredoxin.
       0.785
EDM43453.1
4-hydroxybenzoate-octaprenyltransferase; COG0382 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases.
  
 
 0.692
EDM45691.1
Undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
 
 0.685
EDM43305.1
Hypothetical protein; COG1193 Mismatch repair ATPase (MutS family).
       0.651
EDM45597.1
Putative isoprenoid biosynthesis related protein; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.643
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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