Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43315.1CheA Signal Transduction Histidine Kinases (STHK); COG3210 Large exoproteins involved in heme utilization or adhesion. (2101 aa)    
Predicted Functional Partners:
EDM44948.1
Lipase/acylhydrolase family protein; COG2755 Lysophospholipase L1 and related esterases.
   
 0.725
EDM43313.1
Hypothetical protein.
 
 
  0.621
EDM43314.1
Hypothetical protein.
    
  0.621
EDM43311.1
Outer membrane protein, peptidoglycan-associated lipoprotein; COG0457 FOG: TPR repeat.
  
 
  0.600
EDM43962.1
Outer membrane protein.
  
  0.584
EDM42925.1
COG4775 Outer membrane protein/protective antigen OMA87.
  
  0.584
EDM43221.1
Outer membrane protein; COG2831 Hemolysin activation/secretion protein.
  
  0.584
EDM45752.1
Thrombospondin type 3 repeat family protein/Calx-beta domain protein; COG3291 FOG: PKD repeat.
  
  
  0.566
EDM43537.1
Thrombospondin type 3 repeat family protein/Calx-beta domain protein; COG2931 RTX toxins and related Ca2+-binding proteins.
  
  
  0.537
EDM43686.1
COG2176 DNA polymerase III, alpha subunit (gram-positive type).
  
 
  0.537
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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