STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EDM43332.1Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter. (531 aa)    
Predicted Functional Partners:
EDM43331.1
comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.
       0.738
EDM43330.1
COG1960 Acyl-CoA dehydrogenases.
  
    0.584
EDM43333.1
Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.
       0.553
EDM43334.1
Hypothetical protein.
       0.551
purD
COG0151 Phosphoribosylamine-glycine ligase; Belongs to the GARS family.
    
  0.522
EDM42948.1
CDP-diacylglycerol-serine-O- phosphatidyltransferase; COG1183 Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
    
  0.521
EDM45591.1
COG0038 Chloride channel protein EriC.
  
    0.477
EDM43335.1
Hypothetical protein.
       0.427
EDM43329.1
Hypothetical protein.
       0.421
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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