EDM43333.1 protein (unidentified eubacterium SCB49)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

EDM43333.1

Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component. (336 aa)

Predicted Functional Partners:

EDM43785.1

0.835

EDM43334.1

0.809

EDM44918.1

0.710

EDM43335.1

0.653

EDM43331.1

0.572

EDM43332.1

0.553

adk

0.469

EDM43336.1

0.452

EDM45437.1

0.441

EDM43330.1

0.413

Your Current Organism:

unidentified eubacterium SCB49

NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EDM43330.1	EDM43331.1	SCB49_01207	SCB49_01212	COG1960 Acyl-CoA dehydrogenases.	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	0.627
EDM43330.1	EDM43332.1	SCB49_01207	SCB49_01217	COG1960 Acyl-CoA dehydrogenases.	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	0.584
EDM43330.1	EDM43333.1	SCB49_01207	SCB49_01222	COG1960 Acyl-CoA dehydrogenases.	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	0.413
EDM43330.1	EDM43334.1	SCB49_01207	SCB49_01227	COG1960 Acyl-CoA dehydrogenases.	Hypothetical protein.	0.413
EDM43331.1	EDM43330.1	SCB49_01212	SCB49_01207	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	COG1960 Acyl-CoA dehydrogenases.	0.627
EDM43331.1	EDM43332.1	SCB49_01212	SCB49_01217	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	0.738
EDM43331.1	EDM43333.1	SCB49_01212	SCB49_01222	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	0.572
EDM43331.1	EDM43334.1	SCB49_01212	SCB49_01227	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	Hypothetical protein.	0.579
EDM43331.1	EDM43335.1	SCB49_01212	SCB49_01232	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	Hypothetical protein.	0.678
EDM43332.1	EDM43330.1	SCB49_01217	SCB49_01207	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	COG1960 Acyl-CoA dehydrogenases.	0.584
EDM43332.1	EDM43331.1	SCB49_01217	SCB49_01212	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	0.738
EDM43332.1	EDM43333.1	SCB49_01217	SCB49_01222	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	0.553
EDM43332.1	EDM43334.1	SCB49_01217	SCB49_01227	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	Hypothetical protein.	0.551
EDM43332.1	EDM43335.1	SCB49_01217	SCB49_01232	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	Hypothetical protein.	0.427
EDM43333.1	EDM43330.1	SCB49_01222	SCB49_01207	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	COG1960 Acyl-CoA dehydrogenases.	0.413
EDM43333.1	EDM43331.1	SCB49_01222	SCB49_01212	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	comEA protein-related protein; COG1555 DNA uptake protein and related DNA-binding proteins.	0.572
EDM43333.1	EDM43332.1	SCB49_01222	SCB49_01217	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	Putative Na(+)-linked D-alanine glycine permease; COG1115 Na+/alanine symporter.	0.553
EDM43333.1	EDM43334.1	SCB49_01222	SCB49_01227	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	Hypothetical protein.	0.809
EDM43333.1	EDM43335.1	SCB49_01222	SCB49_01232	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	Hypothetical protein.	0.653
EDM43333.1	EDM43336.1	SCB49_01222	SCB49_01237	Potassium channel protein; COG1226 Kef-type K+ transport systems, predicted NAD-binding component.	COG2884 Predicted ATPase involved in cell division.	0.452