STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43339.1COG1629 Outer membrane receptor proteins, mostly Fe transport. (588 aa)    
Predicted Functional Partners:
EDM43338.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
   
 0.919
EDM45062.1
Hypothetical protein; COG2931 RTX toxins and related Ca2+-binding proteins.
 
 0.883
EDM43195.1
Hypothetical protein.
  
    0.777
EDM43340.1
Hypothetical protein.
       0.773
EDM43304.1
Hypothetical protein; COG1812 Archaeal S-adenosylmethionine synthetase.
  
     0.746
EDM42935.1
Gliding motility-related protein; possible outer membrane protein.
  
     0.745
EDM44734.1
Possible anti-sigma factor; COG3712 Fe2+-dicitrate sensor, membrane component.
 
 
 0.736
EDM43076.1
Hypothetical protein.
  
     0.733
EDM45063.1
Putative tansport related protein; COG0848 Biopolymer transport protein.
 
 
  0.729
EDM45611.1
Hypothetical protein.
  
     0.725
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.