Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43342.1COG3824 Uncharacterized protein conserved in bacteria. (264 aa)    
Predicted Functional Partners:
phhA
COG3186 Phenylalanine-4-hydroxylase.
  
     0.563
EDM45435.1
Hypothetical protein.
  
     0.551
EDM43343.1
COG3184 Uncharacterized protein conserved in bacteria.
       0.545
EDM44531.1
Hypothetical protein.
  
     0.540
EDM43541.1
COG1396 Predicted transcriptional regulators.
  
     0.468
EDM43337.1
Hypothetical protein.
  
     0.437
EDM43955.1
BNR repeat, putative.
  
     0.428
EDM43273.1
Hypothetical protein.
  
     0.412
EDM44326.1
Conserved repeat domain.
  
     0.409
EDM45278.1
Hypothetical protein; COG0419 ATPase involved in DNA repair.
  
     0.405
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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