Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43358.1Hypothetical protein. (121 aa)    
Predicted Functional Partners:
EDM43452.1
Putative lipopolysaccharide biosynthesis-related protein; COG1778 Low specificity phosphatase (HAD superfamily).
     
  0.756
nadD
Nicotinic acid mononucleotide adenyltransferase.
  
     0.725
EDM45130.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.682
EDM43725.1
Hypothetical protein.
  
     0.593
EDM43359.1
Hypothetical protein.
       0.578
EDM43357.1
Hypothetical protein.
       0.572
EDM43097.1
Hypothetical protein.
  
     0.552
EDM44114.1
Hypothetical protein.
  
     0.491
EDM43187.1
Hypothetical protein.
  
     0.487
kgd
Alpha-ketoglutarate decarboxylase.
  
     0.470
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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