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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM43368.1COG1233 Phytoene dehydrogenase and related proteins. (486 aa)    
Predicted Functional Partners:
EDM43369.1
COG1562 Phytoene/squalene synthetase.
 
 0.999
EDM43370.1
Beta-carotene hydroxylase.
 
   
 0.956
EDM43367.1
Probable transcriptional regulator, MerR family protein; COG0789 Predicted transcriptional regulators.
 
     0.876
EDM43371.1
Hypothetical protein.
 
  
 0.833
EDM44647.1
COG1250 3-hydroxyacyl-CoA dehydrogenase.
   
 
 0.692
EDM43792.1
COG3239 Fatty acid desaturase.
    
 0.629
EDM44269.1
COG2124 Cytochrome P450.
    
 0.602
EDM45691.1
Undecaprenyl pyrophosphate synthetase (di-trans,poly-cis-decaprenylcistransferase); Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
    
  0.564
EDM42959.1
Hypothetical protein; COG0500 SAM-dependent methyltransferases.
   
 
  0.562
EDM45597.1
Putative isoprenoid biosynthesis related protein; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.555
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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