STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM43384.1B-glycosyltransferase-related protein, glycosyltransferase family 2 protein; COG0463 Glycosyltransferases involved in cell wall biogenesis. (292 aa)    
Predicted Functional Partners:
EDM43383.1
Hypothetical protein; COG0463 Glycosyltransferases involved in cell wall biogenesis.
    
  0.777
EDM43385.1
COG0463 Glycosyltransferases involved in cell wall biogenesis.
    
  0.698
EDM44224.1
COG1843 Flagellar hook capping protein.
  
    0.678
EDM43067.1
Hypothetical protein.
  
     0.666
EDM44394.1
Hypothetical protein; COG4257 Streptogramin lyase.
  
     0.657
EDM43530.1
Hypothetical protein.
  
     0.570
EDM43378.1
Hypothetical protein; COG0438 Glycosyltransferase.
  
    0.564
EDM43811.1
Outer membrane protein; COG0419 ATPase involved in DNA repair.
  
     0.535
EDM43045.1
COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.508
EDM44324.1
Hypothetical protein; COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
  
     0.496
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.