Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM42938.1Thermophilic serine proteinase; COG1404 Subtilisin-like serine proteases. (540 aa)    
Predicted Functional Partners:
EDM42939.1
Hypothetical protein.
       0.723
EDM43809.1
Putative outer membrane receptor protein.
  
 
  0.692
EDM44888.1
Hypothetical protein.
  
 
  0.682
EDM42919.1
Hypothetical protein; COG0457 FOG: TPR repeat.
 
   0.652
EDM43179.1
Hypothetical protein.
  
  
  0.647
EDM45506.1
CHU large protein; uncharacterized.
  
 
  0.644
EDM43243.1
CHU large protein; uncharacterized.
  
 
  0.641
EDM44595.1
COG2866 Predicted carboxypeptidase.
  
     0.630
EDM45199.1
Hypothetical protein.
  
     0.613
EDM45497.1
Thermolysin; COG3227 Zinc metalloprotease (elastase).
  
   
 0.596
Your Current Organism:
unidentified eubacterium SCB49
NCBI taxonomy Id: 50743
Other names: u. eubacterium SCB49
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